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Systematic discovery of DNA-binding tandem repeat proteins 期刊论文
NUCLEIC ACIDS RESEARCH, 2024, 卷号: 52, 期号: 17, 页码: 10464-10489
作者:  Hu, Xiaoxuan;  Zhang, Xuechun;  Sun, Wen;  Liu, Chunhong;  Deng, Pujuan;  Cao, Yuanwei;  Zhang, Chenze;  Xu, Ning;  Zhang, Tongtong;  Zhang, Yong E.;  Liu, Jun-Jie Gogo;  Wang, Haoyi
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INTRINSICALLY DISORDERED PROTEINS  LEUCINE-RICH REPEAT  TRANSCRIPTION FACTORS  SEQUENCE DATABASE  GENE ACTIVATION  RNA  SPECIFICITY  RECOGNITION  ANNOTATION  SEQ  
Low-input PacBio sequencing generates high-quality individual fly genomes and characterizes mutational processes 期刊论文
NATURE COMMUNICATIONS, 2024, 卷号: 15, 期号: 1, 页码: 3815-3823
作者:  Jia, Hangxing;  Tan, Shengjun;  Cai, Yingao;  Guo, Yanyan;  Shen, Jieyu;  Zhang, Yaqiong;  Ma, Huijing;  Zhang, Qingzhu;  Chen, Jinfeng;  Qiao, Gexia;  Ruan, Jue;  Zhang, Yong E.
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DROSOPHILA-MELANOGASTER  GENE CONVERSION  TRANSPOSABLE ELEMENTS  LIBRARY PREPARATION  NO EVIDENCE  MECHANISMS  EVOLUTION  INSERTION  INSTABILITY  DIFFERENTIATION  
Heterologous survey of 130 DNA transposons in human cells highlights their functional divergence and expands the genome engineering toolbox 期刊论文
CELL, 2024, 卷号: 187, 期号: 14, 页码: 36-51
作者:  Zhang, Tongtong;  Tan, Shengjun;  Tang, Na;  Li, Yuanqing;  Zhang, Chenze;  Sun, Jing;  Guo, Yanyan;  Gao, Hui;  Cai, Yujia;  Sun, Wen;  Wang, Chenxin;  Fu, Liangzheng;  Ma, Huijing;  Wu, Yachao;  Hu, Xiaoxuan;  Zhang, Xuechun;  Gee, Peter;  Yan, Weihua;  Zhao, Yahui;  Chen, Qiang;  Guo, Baocheng;  Wang, Haoyi;  Zhang, Yong E.
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SLEEPING-BEAUTY  GENETIC MANIPULATION  HORIZONTAL TRANSFER  MOLECULAR ARCHITECTURE  MARINER TRANSPOSASE  STRUCTURAL BASIS  T-CELLS  ELEMENTS  EVOLUTION  SEQUENCE  
Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences 期刊论文
NATURE ECOLOGY & EVOLUTION, 2024, 卷号: 8, 期号: 3
作者:  Yu, Daqi;  Ren, Yandong;  Uesaka, Masahiro;  Beavan, Alan J. S.;  Muffato, Matthieu;  Shen, Jieyu;  Li, Yongxin;  Sato, Iori;  Wan, Wenting;  Clark, James W.;  Keating, Joseph N.;  Carlisle, Emily M.;  Dearden, Richard P.;  Giles, Sam;  Randle, Emma;  Sansom, Robert S.;  Feuda, Roberto;  Fleming, James F.;  Sugahara, Fumiaki;  Cummins, Carla;  Patricio, Mateus;  Akanni, Wasiu;  D'Aniello, Salvatore;  Bertolucci, Cristiano;  Irie, Naoki;  Alev, Cantas;  Sheng, Guojun;  de Mendoza, Alex;  Maeso, Ignacio;  Irimia, Manuel;  Fromm, Bastian;  Peterson, Kevin J.;  Das, Sabyasachi;  Hirano, Masayuki;  Rast, Jonathan P.;  Cooper, Max D.;  Paps, Jordi;  Pisani, Davide;  Kuratani, Shigeru;  Martin, Fergal J.;  Wang, Wen;  Donoghue, Philip C. J.;  Zhang, Yong E.;  Pascual-Anaya, Juan
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MULTIPLE SEQUENCE ALIGNMENT  PROVIDES INSIGHTS  GENE DUPLICATIONS  PROTEIN FAMILIES  HOX CLUSTERS  LAMPREY  MODEL  SCALE  CHROMATIN  PHYLOGENY  
Chasing Sequencing Perfection: Marching Toward Higher Accuracy and Lower Costs 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2024
作者:  Jia, Hangxing;  Tan, Shengjun;  Zhang, Yong E.
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RARE MUTATIONS  PARALLEL  QUANTIFICATION  ERRORS  DAMAGE  
'The power of controllers: Transposon-mediated duplicated genes evolve towards neofunctionalization' (vol 50, pg 462, 2023) 期刊论文
JOURNAL OF GENETICS AND GENOMICS, 2024, 卷号: 51, 期号: 1, 页码: 109-109
作者:  Ma, Huijing;  Wang, Mengxia;  Zhang, Yong E.;  Tan, Shengjun
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Database Resources of the National Genomics Data Center,China National Center for Bioinformation in 2022 期刊论文
NUCLEIC ACIDS RESEARCH, 2022, 卷号: 50, 页码: 27-38
作者:  Xue Yongbiao;  Bao Yiming;  Zhang Zhang;  Zhao Wenming;  Xiao Jingfa;  He Shun-min;  Zhang Guoqing;  Li Yixue;  Guoping Zhao;  Chen Runsheng;  Zeng Jingyao;  Zhang Yadong;  Shang Yun-fei;  Mai Jialin;  Shi Shuo;  Lu Mingming;  Bu Congfan;  Zhang Zhewen;  Du Zhenglin;  Wang Yinying;  Kang Hongen;  Xu Tianyi;  Hao Lili;  Jia Peilin;  Jiang Shuai;  Qian Qiheng;  Zhu Tong-tong;  Shang Yunfei;  Zong Wenting;  Jin Tong;  Zhang Yuansheng;  Zou Dong;  Zhang Zhang;  Du Qiang;  Feng Changrui;  Ma Lina;  Zhang Sisi;  Wang Anke;  Dong Lili;  Wang Yan-qing;  Liu Wan;  Yan Xing;  Ling Yunchao;  Zhao Guoping;  Zhou Zhihua;  Kang Wang;  Zhang Tao;  Ma Shuai;  Yan Haoteng;  Liu Zunpeng;  Ji Zejun;  Cai Yusheng;  Wang Si;  Song Moshi;  Ren Jie;  Zhou Qi;  Qu Jing;  Zhang Weiqi;  Liu Guanghui;  Chen Xu;  Chen Tingting;  Sisi Zhang;  Sun Yanling;  Yu Caixia;  Tang Bixia;  Zhu Junwei;  Zhai Shuang;  Sun Yubin;  Chen Qiancheng;  Yang Xiaoyu;  Zhang Xin;  Sang Zhengqi;  Wang Yonggang;  Zhao Yilin;  Chen Huanxin;  Lan Li;  Wang Yanqing;  Ma Yingke;  Jia Yaokai;  Zheng Xin-chang;  Chen Meili;  Dong Zou;  Zhu Tongtong;  Ming Chen;  Niu Guangyi;  Pan Rong;  Jing Wei;  Sang Jian;  Liu Chang;  Xiong Yujia;  Lili Hao;  Zhang Mochen;  Wang Guoliang;  Yi Lizhi;  Wei Zhao;  Zong Wenting;  Wu Song;  Xiong Zhuang;  Rujiao Li;  Zheng Gong;  Li Rujiao;  Liu Lin;  Li Zhao;  Li Qianpeng;  Wei Jing;  Luo Sicheng;  Wang Jiajia;  Shi Yirong;  Zhou Honghong;  Zhang Peng;  Song Tingrui;  Li Yanyan;  Yang Fei;  Li Mengwei;  Li Zhao-hua;  Kang Hongen;  Zheng Xinchang;  Li Ru-jiao;  Tian Dongmei;  Liu Xiaonan;  Li Cuiping;  Teng Xufei;  Song Shuhui;  Zhang Yang;  Niu Guangyi;  Zhu Tongtong;  Zhang Yuansheng;  Chen Ruru;  Zhang Rongqin;  Xu Feng;  Wang Yifan;  Ling Yunchao;  Zhou Chenfen;  Wang Haizhou;  Teschendorff Andrew E.;  He Yungang;  Zhen Yang;  Li Cuiping;  Zhu Junwei;  Li Lun;  Li Na;  Gong Zheng;  Chen Meili;  Ying Cui;  Duan Guangya;  Tong Jin;  Wu Gangao;  Huang Tianhao;  Jin Enhui;  Zhao Wei;  Kang Hailong;  Wang Zhonghuang;  Zeng Jingyao;  Chen Hua;  Li Mingkun;  Zhao Wenming;  Ning Wanshan;  Xue Yu;  Liu Yanhu;  Cui Ying;  Zhou Qijun;  Liu Xingyan;  Zhang Longlong;  Mao Bingyu;  Zhang Shihua;  Zhang Yaping;  Wang Guodong;  Zhu Qianghui;  Li Xin;  Li Menghua;  Liu Yuanming;  Luo Hong;  Wu Xiaoyuan;  Jing Haichun;  Pan Yitong;  Chen Ming;  Ma Lina;  Shi Leisheng;  Li Mingkun;  Lan Li;  Bao Yiming;  Zhao Wen-ming;  Zuo Zhixiang;  Ren Jian;  Zhang Xinxin;  Xiao Yun;  Li Xia;  Liu Dan;  Zhang Chi;  Xue Yu;  Zhao Zheng;  Jiang Tao;  Wu Wanying;  Zhao Fangqing;  Meng Xianwen;  Peng Di;  Luo Hao;  Gao Feng;  Lin Shaofeng;  Liu Chuijie;  Guo Anyuan;  Yuan Hao;  Su Tianhan;  Zhang Yong E.;  Zhou Yincong;  Zhang Weizhi;  Fu Shanshan;  Tan Xiaodan;  Xie Yubin;  Guo Guoji;  Wang Chenwei;  Liao Xingyu;  Ga, Xin;  Wang Jianxin;  Xie Guiyan;  Yuan Chunhui;  Tian Feng;  Yang Dechang;  Tang Dachao;  Wu Wenyi;  Gou Yujie;  Han Cheng;  Cui Qinghua;  Li Xiang Shang;  Li Chuan-Yun;  Luo XiaoTong;  Ren Jia;  Li Xia
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Database Resources of the National Genomics Data Center,China National Center for Bioinformation in 2021 期刊论文
NUCLEIC ACIDS RESEARCH, 2022, 卷号: 50, 页码: 27-38
作者:  Xue Yongbiao;  Bao Yiming;  Zhang Zhang;  Zhao Wenming;  Xiao Jingfa;  He Shun-min;  Zhang Guoqing;  Li Yixue;  Guoping Zhao;  Chen Runsheng;  Zeng Jingyao;  Zhang Yadong;  Shang Yun-fei;  Mai Jialin;  Shi Shuo;  Lu Mingming;  Bu Congfan;  Zhang Zhewen;  Du Zhenglin;  Wang Yinying;  Kang Hongen;  Xu Tianyi;  Hao Lili;  Jia Peilin;  Jiang Shuai;  Qian Qiheng;  Zhu Tong-tong;  Shang Yunfei;  Zong Wenting;  Jin Tong;  Zhang Yuansheng;  Zou Dong;  Zhang Zhang;  Du Qiang;  Feng Changrui;  Ma Lina;  Zhang Sisi;  Wang Anke;  Dong Lili;  Wang Yan-qing;  Liu Wan;  Yan Xing;  Ling Yunchao;  Zhao Guoping;  Zhou Zhihua;  Kang Wang;  Zhang Tao;  Ma Shuai;  Yan Haoteng;  Liu Zunpeng;  Ji Zejun;  Cai Yusheng;  Wang Si;  Song Moshi;  Ren Jie;  Zhou Qi;  Qu Jing;  Zhang Weiqi;  Liu Guanghui;  Chen Xu;  Chen Tingting;  Sisi Zhang;  Sun Yanling;  Yu Caixia;  Tang Bixia;  Zhu Junwei;  Zhai Shuang;  Sun Yubin;  Chen Qiancheng;  Yang Xiaoyu;  Zhang Xin;  Sang Zhengqi;  Wang Yonggang;  Zhao Yilin;  Chen Huanxin;  Lan Li;  Wang Yanqing;  Ma Yingke;  Jia Yaokai;  Zheng Xin-chang;  Chen Meili;  Dong Zou;  Zhu Tongtong;  Ming Chen;  Niu Guangyi;  Pan Rong;  Jing Wei;  Sang Jian;  Liu Chang;  Xiong Yujia;  Lili Hao;  Zhang Mochen;  Wang Guoliang;  Yi Lizhi;  Wei Zhao;  Zong Wenting;  Wu Song;  Xiong Zhuang;  Rujiao Li;  Zheng Gong;  Li Rujiao;  Liu Lin;  Li Zhao;  Li Qianpeng;  Wei Jing;  Luo Sicheng;  Wang Jiajia;  Shi Yirong;  Zhou Honghong;  Zhang Peng;  Song Tingrui;  Li Yanyan;  Yang Fei;  Li Mengwei;  Li Zhao-hua;  Kang Hongen;  Zheng Xinchang;  Li Ru-jiao;  Tian Dongmei;  Liu Xiaonan;  Li Cuiping;  Teng Xufei;  Song Shuhui;  Zhang Yang;  Niu Guangyi;  Zhu Tongtong;  Zhang Yuansheng;  Chen Ruru;  Zhang Rongqin;  Xu Feng;  Wang Yifan;  Ling Yunchao;  Zhou Chenfen;  Wang Haizhou;  Teschendorff Andrew E.;  He Yungang;  Zhen Yang;  Li Cuiping;  Zhu Junwei;  Li Lun;  Li Na;  Gong Zheng;  Chen Meili;  Ying Cui;  Duan Guangya;  Tong Jin;  Wu Gangao;  Huang Tianhao;  Jin Enhui;  Zhao Wei;  Kang Hailong;  Wang Zhonghuang;  Zeng Jingyao;  Chen Hua;  Li Mingkun;  Zhao Wenming;  Ning Wanshan;  Xue Yu;  Liu Yanhu;  Cui Ying;  Zhou Qijun;  Liu Xingyan;  Zhang Longlong;  Mao Bingyu;  Zhang Shihua;  Zhang Yaping;  Wang Guodong;  Zhu Qianghui;  Li Xin;  Li Menghua;  Liu Yuanming;  Luo Hong;  Wu Xiaoyuan;  Jing Haichun;  Pan Yitong;  Chen Ming;  Ma Lina;  Shi Leisheng;  Li Mingkun;  Lan Li;  Bao Yiming;  Zhao Wen-ming;  Zuo Zhixiang;  Ren Jian;  Zhang Xinxin;  Xiao Yun;  Li Xia;  Liu Dan;  Zhang Chi;  Xue Yu;  Zhao Zheng;  Jiang Tao;  Wu Wanying;  Zhao Fangqing;  Meng Xianwen;  Peng Di;  Luo Hao;  Gao Feng;  Lin Shaofeng;  Liu Chuijie;  Guo Anyuan;  Yuan Hao;  Su Tianhan;  Zhang Yong E.;  Zhou Yincong;  Zhang Weizhi;  Fu Shanshan;  Tan Xiaodan;  Xie Yubin;  Guo Guoji;  Wang Chenwei;  Liao Xingyu;  Ga, Xin;  Wang Jianxin;  Xie Guiyan;  Yuan Chunhui;  Tian Feng;  Yang Dechang;  Tang Dachao;  Wu Wenyi;  Gou Yujie;  Han Cheng;  Cui Qinghua;  Li Xiang Shang;  Li Chuan-Yun;  Luo XiaoTong;  Ren Jia;  Li Xia
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DOSAGE SENSITIVITY AND EXON SHUFFLING SHAPE THE LANDSCAPE OF POLYMORPHIC DUPLICATES IN DROSOPHILA AND HUMANS 期刊论文
Nature Ecology & Evolution, 2022, 卷号: 6, 期号: 3
作者:  Zhang Dan;  Leng Liang;  Chen Chunyan;  Huang Jiawei;  Zhang Yaqiong;  Yuan Hao;  Ma Chenyu;  Chen Hua;  Zhang Yong E.
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Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes 期刊论文
Cell, 2021, 卷号: 184
作者:  Xupeng Bi;  Kun Wang;  Liandong Yang;  Hailin Pan;  Haifeng Jiang;  Qiwei Wei;  Miaoquan Fang;  Hao Yu;  Chenglong Zhu;  Yiran Cai;  Yuming He;  Xiaoni Gan;  Honghui Zeng;  Daqi Yu;  Youan Zhu;  Huifeng Jiang;  Qiang Qiu;  Huanming Yang;  Yong E. Zhang;  Wen Wang;  Min Zhu;  Shunping He;  Guojie Zhang *
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